SITE-CONFIG: Running build from: /home/john/Dev/genome-models/HMM
SITE-CONFIG: Using boost at: /home/john/src/boost/boost_1_59_0
SITE-CONFIG: Using boost indexing suite at: /home/john/src/boost/indexing_suite_v2
SITE-CONFIG: Using boost sandbox at: /home/john/Dev/ThirdParty/boost/_sandbox
SITE-CONFIG: Using xerces-c at: /tmp/xercesc
SITE-CONFIG: Using seqan at: /home/john/src/seqan/git
SITE-CONFIG: Using myrrh at: /home/john/Dev/myrrh
SITE-CONFIG: Using hmm at: /home/john/Dev/Bio/hmm
SITE-CONFIG: Using google CPU profiler.
Performing configuration checks

    - 32-bit                   : no  (cached)
    - 64-bit                   : yes (cached)
    - arm                      : no  (cached)
    - mips1                    : no  (cached)
    - power                    : no  (cached)
    - sparc                    : no  (cached)
    - x86                      : yes (cached)
    - symlinks supported       : yes (cached)
...patience...
...patience...
...found 6491 targets...
...updating 2 targets...
gcc.compile.c++ bin/gcc-4.8/release/sandbox/multi_array_range.o
In file included from /home/john/src/boost/boost_1_59_0/boost/range/size.hpp:19:0,
from sandbox/multi_array_range.cpp:1:
/home/john/src/boost/boost_1_59_0/boost/range/begin.hpp: In instantiation of ‘boost::range_iterator<
        boost::detail::multi_array::const_sub_array<float, 1ul, const float *>; boost::range_iterator<C>::type = boost::detail::multi_array::array_iterator<
            float, float *, mpl_::size_t<1ul>, float &, boost::iterators::random_access_traversal_tag> 
    >::type boost::range_detail::range_begin(
        boost::detail::multi_array::const_sub_array<float, 1ul, const float *>; boost::range_iterator<C>::type = boost::detail::multi_array::array_iterator<
            float, float *, mpl_::size_t<1ul>, float &, boost::iterators::random_access_traversal_tag> &)’:
/home/john/src/boost/boost_1_59_0/boost/range/begin.hpp:102:27:   required from ‘boost::range_iterator<
        C
    >::type boost::range_adl_barrier::begin(
        boost::detail::multi_array::const_sub_array<float, 1ul, const float *>; boost::range_iterator<C>::type = boost::detail::multi_array::array_iterator<
            float, float *, mpl_::size_t<1ul>, float &, boost::iterators::random_access_traversal_tag> &)’
/home/john/src/boost/boost_1_59_0/boost/range/concepts.hpp:287:48:   required from ‘boost::SinglePassRangeConcept<boost::detail::multi_array::const_sub_array<float, 1ul, const float *> >::~
    SinglePassRangeConcept()’
/home/john/src/boost/boost_1_59_0/boost/concept/detail/general.hpp:39:28:   required from ‘static void boost::concepts::requirement<
        boost::concepts::failed ************ boost::SinglePassRangeConcept<boost::detail::multi_array::const_sub_array<float, 1ul, const float *> >::************>::failed()’
/home/john/src/boost/boost_1_59_0/boost/range/size.hpp:62:9:   required from ‘boost::range_size<
        const T>::type boost::size(const boost::detail::multi_array::const_sub_array<float, 1ul, const float *>; boost::range_size<const T>::type = long unsigned int &)’
sandbox/multi_array_range.cpp:14:29:   required from here
/home/john/src/boost/boost_1_59_0/boost/range/begin.hpp:47:24: error: could not convert ‘boost::detail::multi_array::const_sub_array<
        float; long unsigned int NumDims = 1ul; TPtr = const float *; boost::detail::multi_array::const_sub_array<T, NumDims, TPtr>::const_iterator = boost::detail::multi_array::array_iterator<
            float, const float *, mpl_::size_t<1ul>, const float &, boost::iterators::random_access_traversal_tag>, NumDims, TPtr>::begin() const()’ from ‘boost::detail::multi_array
    ::const_sub_array<float, 1ul, const float *>::const_iterator {
        aka boost::detail::multi_array::array_iterator<float, const float *, mpl_::size_t<1ul>, const float &, boost::iterators::random_access_traversal_tag>}’ to ‘boost::range_detail
    ::extract_iterator<boost::detail::multi_array::const_sub_array<float, 1ul, const float *>, true>::type {
        aka boost::detail::multi_array::array_iterator<float, float *, mpl_::size_t<1ul>, float &, boost::iterators::random_access_traversal_tag>}’
return c.begin();
^
In file included from /home/john/src/boost/boost_1_59_0/boost/range/size.hpp:20:0,
from sandbox/multi_array_range.cpp:1:
/home/john/src/boost/boost_1_59_0/boost/range/end.hpp: In instantiation of ‘boost::range_iterator<
        boost::detail::multi_array::const_sub_array<float, 1ul, const float *>; boost::range_iterator<C>::type = boost::detail::multi_array::array_iterator<
            float, float *, mpl_::size_t<1ul>, float &, boost::iterators::random_access_traversal_tag> 
    >::type boost::range_detail::range_end(
        boost::detail::multi_array::const_sub_array<float, 1ul, const float *>; boost::range_iterator<C>::type = boost::detail::multi_array::array_iterator<
            float, float *, mpl_::size_t<1ul>, float &, boost::iterators::random_access_traversal_tag> &)’:
/home/john/src/boost/boost_1_59_0/boost/range/end.hpp:96:25:   required from ‘boost::range_iterator<
        C
    >::type boost::range_adl_barrier::end(
        boost::detail::multi_array::const_sub_array<float, 1ul, const float *>; boost::range_iterator<C>::type = boost::detail::multi_array::array_iterator<
            float, float *, mpl_::size_t<1ul>, float &, boost::iterators::random_access_traversal_tag> &)’
/home/john/src/boost/boost_1_59_0/boost/range/concepts.hpp:288:46:   required from ‘boost::SinglePassRangeConcept<boost::detail::multi_array::const_sub_array<float, 1ul, const float *> >::~
    SinglePassRangeConcept()’
/home/john/src/boost/boost_1_59_0/boost/concept/detail/general.hpp:39:28:   required from ‘static void boost::concepts::requirement<
        boost::concepts::failed ************ boost::SinglePassRangeConcept<boost::detail::multi_array::const_sub_array<float, 1ul, const float *> >::************>::failed()’
/home/john/src/boost/boost_1_59_0/boost/range/size.hpp:62:9:   required from ‘boost::range_size<
        const T>::type boost::size(const boost::detail::multi_array::const_sub_array<float, 1ul, const float *>; boost::range_size<const T>::type = long unsigned int &)’
sandbox/multi_array_range.cpp:14:29:   required from here
/home/john/src/boost/boost_1_59_0/boost/range/end.hpp:48:26: error: could not convert ‘boost::detail::multi_array::const_sub_array<
        float; long unsigned int NumDims = 1ul; TPtr = const float *; boost::detail::multi_array::const_sub_array<T, NumDims, TPtr>::const_iterator = boost::detail::multi_array::array_iterator<
            float, const float *, mpl_::size_t<1ul>, const float &, boost::iterators::random_access_traversal_tag>, NumDims, TPtr>::end() const()’ from ‘boost::detail::multi_array
    ::const_sub_array<float, 1ul, const float *>::const_iterator {
        aka boost::detail::multi_array::array_iterator<float, const float *, mpl_::size_t<1ul>, const float &, boost::iterators::random_access_traversal_tag>}’ to ‘boost::range_detail
    ::extract_iterator<boost::detail::multi_array::const_sub_array<float, 1ul, const float *>, true>::type {
        aka boost::detail::multi_array::array_iterator<float, float *, mpl_::size_t<1ul>, float &, boost::iterators::random_access_traversal_tag>}’
return c.end();
^

    "/home/john/src/stlfilt/gfilt"  -ftemplate-depth-128 -std=c++0x -Wno-deprecated -Wno-unused -Wno-error -O3 -finline-functions -Wno-inline -Wall -fPIC  -DBOOST_DATE_TIME_DYN_LINK=1 -DBOOST_DISABLE_ASSERTS -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_PROGRAM_OPTIONS_DYN_LINK=1 -DBOOST_PYTHON_NO_PY_SIGNATURES -DDATE_TIME_INLINE -DNDEBUG  -I"." -I"/home/john/src/boost/boost_1_59_0" -I"/usr/include/python2.7" -I"/usr/local/lib/python2.6/dist-packages/numpy/core/include" -I"boost-indexing-suite" -I"myrrh" -c -o "bin/gcc-4.8/release/sandbox/multi_array_range.o" "sandbox/multi_array_range.cpp"

...failed gcc.compile.c++ bin/gcc-4.8/release/sandbox/multi_array_range.o...
...failed updating 1 target...